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content/tutorials/compute-to-data-algorithms.md Normal file
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---
title: Writing Algorithms for Compute to Data
description: Learn how to write algorithms for use in Ocean Protocol's Compute-to-Data feature.
---
## Overview
An algorithm in the Ocean Protocol stack is another asset type, in addition to data sets. An algorithm for Compute to Data is composed of the following:
- an algorithm code
- a Docker image (base image + tag)
- an entry point
## Environment
When creating an algorithm asset in Ocean Protocol, the additional `algorithm` object needs to be included in its metadata service to define the Docker container environment:
```json
{
"algorithm": {
"container": {
"entrypoint": "node $ALGO",
"image": "node",
"tag": "latest"
}
}
}
```
| Variable | Usage |
| ------------ | --------------------------------------------------------------------------------------------------------------------------------------- |
| `image` | The Docker image name the algorithm will run with. |
| `tag` | The Docker image tag that you are going to use. |
| `entrypoint` | The Docker entrypoint. `$ALGO` is a macro that gets replaced inside the compute job, depending where your algorithm code is downloaded. |
When publishing an algorithm through the [Ocean Market](https://market.oceanprotoco.com), these properties can be set via the publish UI.
### Environment Examples
Run an algorithm written in JavaScript/Node.js, based on Node.js v14:
```json
{
"algorithm": {
"container": {
"entrypoint": "node $ALGO",
"image": "node",
"tag": "14"
}
}
}
```
Run an algorithm written in Python, based on Python v3.9:
```json
{
"algorithm": {
"container": {
"entrypoint": "python3.9 $ALGO",
"image": "python",
"tag": "3.9.4-alpine3.13"
}
}
}
```
Be aware that you might need a lot of dependencies, so it's a lot faster if you are going to build your own image and publish your algorithm with that custom image. We also collect some [example images](https://github.com/oceanprotocol/algo_dockers).
### Data Storage
As part of a compute job, every algorithm runs in a K8s pod with these volumes mounted:
| Path | Permissions | Usage |
| --------------- | ----------- | --------------------------------------------------------------------------------------------------------------------------------------------------------- |
| `/data/inputs` | read | Storage for input data sets, accessible only to the algorithm running in the pod. |
| `/data/ddos` | read | Storage for all DDOs involved in compute job (input data set + algorithm). |
| `/data/outputs` | read/write | Storage for all of the algorithm's output files. They are uploaded on some form of cloud storage, and URLs are sent back to the consumer. |
| `/data/logs/` | read/write | All algorithm output (such as `print`, `console.log`, etc.) is stored in a file located in this folder. They are stored and sent to the consumer as well. |
### Environment variables available to algorithms
For every algorithm pod, the Compute to Data environment provides the following environment variables:
| Variable | Usage |
| -------------------- | ------------------------------------------------------ |
| `DIDS` | An array of DID strings containing the input datasets. |
| `TRANSFORMATION_DID` | The DID of the algorithm. |
## Example: JavaScript/Node.js
The following is a simple JavaScript/Node.js algorithm, doing a line count for ALL input datasets. The algorithm is not using any environment variables, but instead it's scanning the `/data/inputs` folder.
```js
const fs = require('fs')
const inputFolder = '/data/inputs'
const outputFolder = '/data/outputs'
async function countrows(file) {
console.log('Start counting for ' + file)
const fileBuffer = fs.readFileSync(file)
const toString = fileBuffer.toString()
const splitLines = toString.split('\n')
const rows = splitLines.length - 1
fs.appendFileSync(outputFolder + '/output.log', file + ',' + rows + '\r\n')
console.log('Finished. We have ' + rows + ' lines')
}
async function processfolder(folder) {
const files = fs.readdirSync(folder)
for (const i = 0; i < files.length; i++) {
const file = files[i]
const fullpath = folder + '/' + file
if (fs.statSync(fullpath).isDirectory()) {
await processfolder(fullpath)
} else {
await countrows(fullpath)
}
}
}
processfolder(inputFolder)
```
This snippet will create and expose the following files as compute job results to the consumer:
- `/data/outputs/output.log`
- `/data/logs/algo.log`
To run this, use the following container object:
```json
{
"algorithm": {
"container": {
"entrypoint": "node $ALGO",
"image": "node",
"tag": "12"
}
}
}
```
## Example: Python
A more advanced line counting in Python, which relies on environment variables and constructs a job object, containing all the input files & DDOs
```python
import pandas as pd
import numpy as np
import os
import time
import json
def get_job_details():
"""Reads in metadata information about assets used by the algo"""
job = dict()
job['dids'] = json.loads(os.getenv('DIDS', None))
job['metadata'] = dict()
job['files'] = dict()
job['algo'] = dict()
job['secret'] = os.getenv('secret', None)
algo_did = os.getenv('TRANSFORMATION_DID', None)
if job['dids'] is not None:
for did in job['dids']:
# get the ddo from disk
filename = '/data/ddos/' + did
print(f'Reading json from {filename}')
with open(filename) as json_file:
ddo = json.load(json_file)
# search for metadata service
for service in ddo['service']:
if service['type'] == 'metadata':
job['files'][did] = list()
index = 0
for file in service['attributes']['main']['files']:
job['files'][did].append(
'/data/inputs/' + did + '/' + str(index))
index = index + 1
if algo_did is not None:
job['algo']['did'] = algo_did
job['algo']['ddo_path'] = '/data/ddos/' + algo_did
return job
def line_counter(job_details):
"""Executes the line counter based on inputs"""
print('Starting compute job with the following input information:')
print(json.dumps(job_details, sort_keys=True, indent=4))
""" Now, count the lines of the first file in first did """
first_did = job_details['dids'][0]
filename = job_details['files'][first_did][0]
non_blank_count = 0
with open(filename) as infp:
for line in infp:
if line.strip():
non_blank_count += 1
print ('number of non-blank lines found %d' % non_blank_count)
""" Print that number to output to generate algo output"""
f = open("/data/outputs/result", "w")
f.write(str(non_blank_count))
f.close()
if __name__ == '__main__':
line_counter(get_job_details())
```
To run this algorithm, use the following `container` object:
```json
{
"algorithm": {
"container": {
"entrypoint": "python3.6 $ALGO",
"image": "oceanprotocol/algo_dockers",
"tag": "python-sql"
}
}
}
```

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---
title: Writing C2D Algorithms
description:
---
## Overview
An C2D algorithm is composed of the following:
- a docker image (base image + tag)
- an algorithm code
- a entry point
That's why, while creating the algorithm asset in ocean, we need the additional object "algorithm" defined in the metadata service:
```json
"algorithm": {
"container": {
"entrypoint": "node $ALGO",
"image": "node",
"tag": "latest"
}
}
```
Most important attributes are the following:
- image: this is the docker image that your are going to use
- tag: this is the docker image tag that you are going to use
- entrypoint: this is the entrypoint. $ALGO is a macro that gets replaced inside C2D, depending where your algo code is downloaded
Here are some examples:
- to run a JS algo, based on node 14:
```json
"algorithm": {
"container": {
"entrypoint": "node $ALGO",
"image": "node",
"tag": "14"
}
}
```
- to run a python algo, based on python:3.9.4-alpine3.13:
```json
"algorithm": {
"container": {
"entrypoint": "python3.9 $ALGO",
"image": "python",
"tag": "3.9.4-alpine3.13"
}
}
```
Be aware that you might need a lot of dependencies, so it's a lot faster if you are going to build your own images (we build some [HERE](https://github.com/oceanprotocol/algo_dockers))
## Data structure
Every algorithm pod will have some volumes mounted:
- /data/inputs (read only) - this is where the datasets are going to be stored
- /data/ddos (read only) - this is where all DDOs (input + algorithm) are going to be stored
- /data/outputs - this is where the algorithm should store all output files (they are going to be uploaded on storage and URLs sent back to the consumer)
All algorithm output (such as print, console.log, etc) are going to be stored in a file located in /data/logs/. They are going to be stored and sent to the customer as well
## ENV variables available to algorithms
For every algorithm pod, C2D is going to provide the following ENVs:
- DIDS: this is an array containing the input datasets
- TRANSFORMATION_DID: this is the algorithm did
## Sample Algorithms
## JS example
The following is a simple js algorithm, that does a line count for ALL input datasets. The algo is not using any ENVS, but instead it's scanning the /data/inputs folder.
```js
const fs = require("fs")
const path = require("path")
var input_folder="/data/inputs";
var output_folder="/data/outputs"
async function processfolder(Path) {
var files = fs.readdirSync(Path)
for (var i = 0; i < files.length; i++) {
var file=files[i];
var fullpath=Path + "/" + file;
if (fs.statSync(fullpath).isDirectory()) {
await processfolder(fullpath)
} else {
await countrows(fullpath)
}
}
}
async function countrows(file){
console.log("Start counting for "+file)
var fileBuffer = fs.readFileSync(file);
var to_string = fileBuffer.toString();
var split_lines = to_string.split("\n");
var rows=split_lines.length-1;
fs.appendFileSync(output_folder+'/output.log', file+','+rows+"\r\n");
console.log('Finished. We have '+rows+' lines')
}
processfolder(input_folder)
```
To run this, use the following container object:
```json
"algorithm": {
"container": {
"entrypoint": "node $ALGO",
"image": "node",
"tag": "10"
}
}
```
## Advanced Python example
A more advanced python line counting, which relies on ENVs and constructs a job object, containing all the input files & ddos
```python
import pandas as pd
import numpy as np
import os
import time
import json
def get_job_details():
"""Reads in metadata information about assets used by the algo"""
job = dict()
job['dids'] = json.loads(os.getenv('DIDS', None))
job['metadata'] = dict()
job['files'] = dict()
job['algo'] = dict()
job['secret'] = os.getenv('secret', None)
algo_did = os.getenv('TRANSFORMATION_DID', None)
if job['dids'] is not None:
for did in job['dids']:
# get the ddo from disk
filename = '/data/ddos/' + did
print(f'Reading json from {filename}')
with open(filename) as json_file:
ddo = json.load(json_file)
# search for metadata service
for service in ddo['service']:
if service['type'] == 'metadata':
job['files'][did] = list()
index = 0
for file in service['attributes']['main']['files']:
job['files'][did].append(
'/data/inputs/' + did + '/' + str(index))
index = index + 1
if algo_did is not None:
job['algo']['did'] = algo_did
job['algo']['ddo_path'] = '/data/ddos/' + algo_did
return job
def line_counter(job_details):
"""Executes the line counter based on inputs"""
print('Starting compute job with the following input information:')
print(json.dumps(job_details, sort_keys=True, indent=4))
""" Now, count the lines of the first file in first did """
first_did = job_details['dids'][0]
filename = job_details['files'][first_did][0]
non_blank_count = 0
with open(filename) as infp:
for line in infp:
if line.strip():
non_blank_count += 1
print ('number of non-blank lines found %d' % non_blank_count)
""" Print that number to output to generate algo output"""
f = open("/data/outputs/result", "w")
f.write(str(non_blank_count))
f.close()
if __name__ == '__main__':
line_counter(get_job_details())
```
To run this, use the following container object:
```json
"algorithm": {
"container": {
"entrypoint": "python3.6 $ALGO",
"image": "oceanprotocol/algo_dockers",
"tag": "python-sql"
}
}
```

4
data/sidebars/tutorials.yml
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@ -24,10 +24,10 @@
- group: Compute-to-Data - group: Compute-to-Data
items: items:
- title: Writing Algorithms
link: /tutorials/compute-to-data-algorithms/
- title: Run a Compute-to-Data Environment - title: Run a Compute-to-Data Environment
link: /tutorials/compute-to-data/ link: /tutorials/compute-to-data/
- title: Writing C2D Algorithms
link: /tutorials/write-c2d-algorithms/
- group: Storage Setup - group: Storage Setup
items: items:

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